Quanto - Sample size and power calculations for genetic-epidemiology studies
GxEscan - Detect GxE interactions in a genome-wide association study
GxGscan - Detect GxG interactions in a genome-wide association study
PriorityPruner - PriorityPruner is a software program which can prune a list of SNPs that are in high linkage disequilibrium (LD) with other SNPs in the list, while preferentially keeping/selecting SNPs of higher priority (e.g., the most significant SNPs in a genome-wide association study).
R Packagesfdrci - Permutation-based FDR Point and Confidence Interval Estimation
cit - Causal Inference Test