Software by USC Biostats

Software available for Download

Quanto - Sample size and power calculations for genetic-epidemiology studies

GxEscan - Detect GxE interactions in a genome-wide association study

GxGscan - Detect GxG interactions in a genome-wide association study

PriorityPruner - PriorityPruner is a software program which can prune a list of SNPs that are in high linkage disequilibrium (LD) with other SNPs in the list, while preferentially keeping/selecting SNPs of higher priority (e.g., the most significant SNPs in a genome-wide association study).

R Packages

fdrci - Permutation-based FDR Point and Confidence Interval Estimation
cit - Causal Inference Test